PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g006000.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 402aa    MW: 46080.3 Da    PI: 5.2204
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g006000.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.4e-34141052102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F+ k+ye+++d++++ ++sws n++sf+v ++ +fa+++Lp+yFkh+nf+SF+RQLn+YgFkk++ e+         weF+++ F +g+ +
  Sopim03g006000.0.1  14 FIAKIYEMVDDPSTDPIVSWSLNNKSFIVRNPPDFARDLLPRYFKHNNFSSFIRQLNTYGFKKIDPEQ---------WEFANEDFLRGQPH 95 
                         9********************999****************************************9998.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i r+k 
  Sopim03g006000.0.1  96 LLKNIYRRKP 105
                         *******985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.5E-37998IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5910103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3410103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.6E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDEAPCSVNA LPPFIAKIYE MVDDPSTDPI VSWSLNNKSF IVRNPPDFAR DLLPRYFKHN  60
NFSSFIRQLN TYGFKKIDPE QWEFANEDFL RGQPHLLKNI YRRKPVHSHS VQNIHSLSSS  120
ALTESERQGY KEDIEKLKHE NESLHLVLHR HKQDHQGLEM QMQVLNQRVQ QVKDRQKNVL  180
STLARTINKP GLALSLMPQL EMNERKRRLP GNSFLYNEIG LEDNQASSSE NTTRENMDHT  240
SLSTLNKEVL DQLESSLTFW EYTLRDIDQT RMRRSSSIDL DESISCADSP AISYPQLTVD  300
VGSKVSDIDM NSEPNGNTTP DVTPPENRVE TASHNVPTGV NDVFWEQFLT ENPGSTDVKP  360
EREDMESKIS ESKTVEDGKF WWNRKTVISL TEQLGHLTPA E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D5e-241110326129Heat shock factor protein 1
5d5v_B5e-241110326129Heat shock factor protein 1
5d5u_B5e-241110326129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208ERKRRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0146190.0BT014619.1 Lycopersicon esculentum clone 134122F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010317423.10.0PREDICTED: heat stress transcription factor A-4a
RefseqXP_010317424.10.0PREDICTED: heat stress transcription factor A-4a
TrEMBLK4BE230.0K4BE23_SOLLC; Uncharacterized protein
STRINGSolyc03g006000.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-108heat shock transcription factor A4A